A. Albajes-eizagirre, L. Romero, A. Soria-frisch, and Q. Vanhellemont, Jellyfish prediction of occurrence from remote sensing data and a non-linear pattern recognition approach, Presented at the SPIE Remote Sensing, p.817418, 2011.

M. J. Alizadeh, M. R. Kavianpour, O. Kisi, and V. Nourani, A new approach for simulating and forecasting the rainfall-runoff process within the next two months, Journal of Hydrology, vol.548, pp.588-597, 2017.

R. Ambo-rappe, M. N. Nessa, H. Latuconsina, and D. L. Lajus, Relationship between the tropical seagrass bed characteristics and the structure of the associated fish community, Open Journal of Ecology, vol.03, pp.331-342, 2013.

M. J. Anderson, Permutational Multivariate Analysis of Variance (PERMANOVA), in: Wiley StatsRef: Statistics Reference Online, pp.1-15, 2017.

T. W. Anderson, C. T. Bartels, M. A. Hixon, E. Bartels, M. H. Carr et al., Current velocity and catch efficiency in sampling settlement-stage larvae of coral-reef fishes, Fishery Bulletin, vol.100, pp.404-413, 2002.

E. Archer, Estimate Permutation p-Values for Random Forest Importance Metrics, 2016.

R. Arfi, M. Baklouti, Y. Bettarel, J. Blanchot, T. Bouvier et al., , 2008.

M. Toliara, Atelier de fin de saison humide. Programme PNEC-EC2CO, contrat universitaire, Contrat universitaire 2006 / 10301726.. (ICAR -GRT), 2007.

R. Arfi, M. Baklouti, Y. Bettarel, J. Blanchot, T. Bouvier et al., Impact des changements climatiques et anthropiques sur les flux trophiques du Grand Récif de Toliara, 2007.

, Contrat universitaire, 2006.

R. Avendaño-ibarra, E. Godínez-domínguez, G. Aceves-medina, E. González-rodríguez, and A. Trasviña, Fish Larvae Response to Biophysical Changes in the Gulf of California, Mexico (Winter-Summer), Journal of Marine Biology, pp.1-17, 2013.

K. M. Bailey, H. Nakata, and H. W. Van-der-veer, The Planktonic Stages of Flatfishes: Physical and Biological Interactions in Transport Processes, pp.94-119, 2005.

D. G. Baker, T. D. Eddy, R. Mciver, A. L. Schmidt, M. Thériault et al., Comparative analysis of different survey methods for monitoring fish assemblages in coastal habitats, 2016.

S. A. Banks, G. A. Skilleter, and H. P. Possingham, Intertidal habitat conservation: identifying conservation targets in the absence of detailed biological information. Aquatic Conservation: Marine and Freshwater Ecosystems, vol.15, pp.271-288, 2005.

M. W. Beck, K. L. Heck, K. W. Able, D. L. Childers, D. B. Eggleston et al., The Identification, Conservation, and Management of Estuarine and Marine Nurseries for Fish and InvertebratesA better understanding of the habitats that serve as nurseries for marine species and the factors that create site-specific variability in nursery quality will improve conservation and management of these areas, BioScience, vol.51, pp.633-641, 2001.

I. Berenshtein, C. B. Paris, H. Gildor, E. Fredj, Y. Amitai et al., Auto-correlated directional swimming can enhance settlement success and connectivity in fish larvae, Journal of Theoretical Biology, vol.439, pp.76-85, 2018.

M. Blaxter, Imagining Sisyphus happy: DNA barcoding and the unnamed majority, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol.371, 2016.

P. Borsa, J. Durand, W. Chen, N. Hubert, D. Muths et al., Comparative phylogeography of the western Indian Ocean reef fauna. Acta Oecologica., Îles Éparses (French Scattered Islands, SW Indian Ocean) as reference ecosystems for environmental research, vol.72, pp.72-86, 2016.
URL : https://hal.archives-ouvertes.fr/ird-01278855

L. Breiman, A. Cutler, A. Liaw, and M. Wiener, Breiman and Cutler's Random Forests for Classification and Regression, 2018.

L. Briot, Etude de l'activité de capture de post-larves dans les îles de l'océan Indien occidental, Université Sciences et Techniques, 2012.

R. Brodeur, W. Peterson, T. Auth, H. Soulen, M. Parnel et al., Abundance and diversity of coastal fish larvae as indicators of recent changes in ocean and climate conditions in the Oregon upwelling zone, Marine Ecology Progress Series, vol.366, pp.187-202, 2008.

J. H. Bruggemann, M. Rodier, M. M. Guillaume, S. Andréfouët, R. Arfi et al., Wicked Social-Ecological Problems Forcing Unprecedented Change on the Latitudinal Margins of Coral Reefs: the Case of Southwest Madagascar, Ecology and Society, vol.17, p.47, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00852797

S. C. Burgess, M. J. Kingsford, and K. P. Black, Influence of tidal eddies and wind on the distribution of presettlement fishes around One Tree Island, Great Barrier Reef, Marine Ecology Progress Series, vol.341, pp.233-242, 2007.

S. J. Campbell, T. Kartawijaya, and E. Sabarini, Connectivity in reef fish assemblages between seagrass and coral reef habitats, Aquatic Biology, vol.13, pp.65-77, 2011.

L. Carassou, R. Le-borgne, E. Rolland, and D. Ponton, Spatial and temporal distribution of zooplankton related to the environmental conditions in the coral reef lagoon of New Caledonia, Southwest Pacific, Marine Pollution Bulletin, pp.367-374, 2010.

L. Carassou, D. Ponton, C. Mellin, and R. Galzin, Predicting the structure of larval fish assemblages by a hierarchical classification of meteorological and water column forcing factors, Coral Reefs, vol.27, pp.867-880, 2008.

E. Chassot, S. Bonhommeau, N. K. Dulvy, F. Mélin, R. Watson et al., Global marine primary production constrains fisheries catches, Ecology Letters, vol.13, pp.495-505, 2010.
URL : https://hal.archives-ouvertes.fr/ird-00470551

L. Chen, K. Lan, Y. Chang, and W. Chen, Summer Assemblages and Biodiversity of Larval Fish Associated with Hydrography in the Northern South China Sea. Marine and Coastal Fisheries, vol.10, pp.467-480, 2018.

C. Chevalier, J. Devenon, G. Rougier, and J. Blanchot, Hydrodynamics of the Toliara Reef Lagoon (Madagascar): Example of a Lagoon Influenced by Waves and Tides, Journal of Coastal Research, vol.31, pp.1403-1416, 2015.

H. J. Cho, Effects of Prevailing Winds on Turbidity of a Shallow Estuary, International Journal of Environmental Research and Public Health, vol.4, pp.185-192, 2007.

K. M. Chong-seng, K. L. Nash, D. R. Bellwood, and N. A. Graham, Macroalgal herbivory on recovering versus degrading coral reefs, Coral Reefs, vol.33, pp.409-419, 2014.

J. E. Cinner, Social-ecological traps in reef fisheries, Symposium on Social Theory and the Environment in the New World (dis)Order, vol.21, pp.835-839, 2011.

J. J. Cione, P. Molina, J. Kaplan, and P. G. Black, SST time series directly under tropical cyclones: Observations and implications. Presented at the Preprint 24th Conference on Hurricanes and Tropical Meteorology, 2000.

K. R. Clarke, R. M. Warwick, and P. M. Laboratory, Change in marine communities : an approach to statistical analysis and interpretation, 1994.

E. Cocheret-de-la-morinière, B. J. Pollux, I. Nagelkerken, and G. Van-der-velde, Postsettlement Life Cycle Migration Patterns and Habitat Preference of Coral Reef Fish that use Seagrass and Mangrove Habitats as Nurseries, Estuarine, Coastal and Shelf Science, vol.55, pp.309-321, 2002.

A. Collet, D. Ponton, P. Valade, J. D. Durand, H. Jaonalison et al., DNA barcoding of reef fish postlarvae as a tool for investigating fish biodiversity off La Réunion Island, 2015.

A. Collet, J. Durand, E. Desmarais, F. Cerqueira, T. Cantinelli et al., DNA barcoding post-larvae can improve the knowledge about fish biodiversity: an example from La Reunion, SW Indian Ocean. Mitochondrial DNA Part A, vol.29, pp.905-918, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02002352

R. A. Collins and R. H. Cruickshank, The seven deadly sins of DNA barcoding, Molecular Ecology Resources, vol.13, pp.969-975, 2013.

R. Connolly, Comparison of fish catches from a buoyant pop net and a beach seine net in a shallow seagrass habitat, Marine Ecology Progress Series, vol.109, pp.305-309, 1994.

A. Cooke, . Ratomahenina, E. Ranaivosoin, and H. Razafindraibe, Madagascar, in: Seas at the Millennium: An Environmental Evaluation: 2. Regional Chapters: The Indian Ocean to The Pacific, pp.113-131, 2000.

R. Cowen, G. Gawarkiewicz, J. Pineda, S. Thorrold, and F. Werner, Population Connectivity in Marine Systems: An Overview, Oceanography, vol.20, pp.14-21, 2007.

R. K. Cowen and P. F. Sale, Larval Dispersal and Retention and Consequences for Population Connectivity, in: Coral Reef Fishes: Dynamics and Diversity in a Complex Ecosystem, pp.149-170, 2002.

A. Criscoli, P. Carpentieri, F. Colloca, A. Belluscio, and G. Ardizzone, Identification and Characterization of Nursery Areas of Red Mullet Mullus barbatus in the Central Tyrrhenian Sea. Marine and Coastal Fisheries, vol.9, pp.203-215, 2017.

R. A. Dare and J. L. Mcbride, Sea Surface Temperature Response to Tropical Cyclones, Monthly Weather Review, vol.139, pp.3798-3808, 2011.

B. F. Darst, K. C. Malecki, and C. D. Engelman, Using recursive feature elimination in random forest to account for correlated variables in high dimensional data, BMC Genetics, vol.19, p.65, 2018.

M. De-la-torre-castro, M. Björk, J. Eklöf, and P. Rönnbäck, Seagrass Importance in Food Provisioning Services: Fish Stomach Content as a Link between Seagrass Meadows and Local Fisheries, Western Indian Ocean Journal of Marine Science, vol.7, pp.95-110, 2008.

M. De-la-torre-castro, G. Di-carlo, and N. S. Jiddawi, Seagrass importance for a small-scale fishery in the tropics: The need for seascape management, Marine Pollution Bulletin., Seagrass meadows in a globally changing environment, vol.83, pp.398-407, 2014.

V. Dufour, Colonisation des recifs coralliens par les larves de poissons (thesis), 1992.

P. Dumas, A. Bertaud, C. Peignon, M. Léopold, and D. Pelletier, A "quick and clean" photographic method for the description of coral reef habitats, Journal of Experimental Marine Biology and Ecology, vol.368, pp.161-168, 2009.

J. S. Eklöf, . De-la-torre, M. Castro, L. Adelsköld, N. S. Jiddawi et al., Differences in macrofaunal and seagrass assemblages in seagrass beds with and without seaweed farms, Science for management in the western Indian Ocean, vol.63, pp.385-396, 2005.

N. Ellis, S. J. Smith, and C. R. Pitcher, Gradient forests: calculating importance gradients on physical predictors, Ecology, vol.93, pp.156-168, 2012.

K. Emanuel, Contribution of tropical cyclones to meridional heat transport by the oceans, Journal of Geophysical Research: Atmospheres, vol.106, pp.14771-14781, 2001.

. Esr, OSCAR third degree resolution ocean surface currents Ver, 2009.

E. Falfán-vázquez, U. Ordóñez-lópez, and M. Órnelas-roa, Spatial variation of Snapper and Grouper larvae in Yucatan Shelf, Hidrobiológica, vol.18, pp.69-76, 2008.

S. Ferrier and A. Guisan, Spatial modelling of biodiversity at the community level, Journal of Applied Ecology, vol.43, pp.393-404, 2006.

R. Fricke, J. Mahafina, F. Behivoke, H. Jaonalison, M. Léopold et al., Annotated checklist of the fishes of Madagascar, southwestern Indian Ocean, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01907117

K. Fujii, H. Doi, S. Matsuoka, M. Nagano, H. Sato et al., Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods, PLOS ONE, vol.14, p.210357, 2019.

R. Genuer, J. Poggi, and C. Tuleau-malot, Variable selection using random forests, Pattern Recognition Letters, vol.31, pp.2225-2236, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00755489

H. Grande, S. Rezende, M. De, T. E. Simon, F. C. Félix-hackradt et al., Diversity of settlement-stage reef fishes captured by light-trap in a tropical south-west Atlantic Ocean coastal reef system, Journal of Fish Biology, pp.210-222, 2018.

C. A. Gray, R. C. Chick, and D. J. Mcelligott, Diel Changes in Assemblages of Fishes Associated with Shallow Seagrass and Bare Sand, Estuarine, Coastal and Shelf Science, vol.46, pp.849-859, 1998.

J. Grignon, Capture et Culture des postlarves pour le réensemencement en poissons des récifs coralliens de l'île de Viti Levu aux Fidji (Doctorat), 2010.

K. Grorud-colvert and S. Sponaugle, Larval supply and juvenile recruitment of coral reef fishes to marine reserves and non-reserves of the upper Florida Keys, Marine Biology, vol.156, pp.277-288, 2009.

I. Guyon and A. Elisseeff, An Introduction to Variable and Feature Selection, Journal of Machine Learning Research, vol.3, pp.1157-1182, 2003.

P. A. Hamer and G. P. Jenkins, Larval supply and short-term recruitment of a temperate zone demersal fish, the King George whiting, Sillaginodes punctata Cuvier and Valenciennés, to an embayment in south-eastern Australia, Journal of Experimental Marine Biology and Ecology, vol.208, pp.197-214, 1997.

J. M. Hantanirina and S. Benbow, Diversity and coverage of seagrass ecosystems in southwest Madagascar, African Journal of Marine Science, vol.35, pp.291-297, 2013.

M. L. Harmelin-vivien, Ichtyofaune des récifs coralliens de Tuléar (Madagascar): Ecologie et relations trophiques (Thèse de Doctorat), 1978.

M. L. Harmelin-vivien, Reef Fish Community Structure: An Indo-Pacific Comparison, Vertebrates in Complex Tropical Systems, pp.21-60, 1989.

S. A. Harris, D. P. Cyrus, and L. E. Beckley, Horizontal Trends in Larval Fish Diversity and Abundance Along an Ocean-Estuarine Gradient on the Northern, Estuarine, Coastal and Shelf Science, vol.53, pp.221-235, 2001.

A. J. Healey, N. J. Mckeown, A. L. Taylor, J. Provan, W. Sauer et al., Cryptic species and parallel genetic structuring in Lethrinid fish: Implications for conservation and management in the southwest Indian Ocean, Ecology and Evolution, vol.8, pp.2182-2195, 2018.

M. Hickford and D. Schiel, Evaluation of the performance of light traps for sampling fish larvae in inshore temperate waters, Marine Ecology Progress Series, vol.186, pp.293-302, 1999.

T. B. Hoareau, E. Boissin, and P. Berrebi, Evolutionary history of a widespread Indo-Pacific goby: the role of Pleistocene sea-level changes on demographic contraction/expansion dynamics, Molecular Phylogenetics and Evolution, vol.62, pp.566-572, 2012.

K. Honda, Y. Nakamura, M. Nakaoka, W. H. Uy, and M. D. Fortes, Habitat Use by Fishes in Coral Reefs, Seagrass Beds and Mangrove Habitats in the Philippines, PLoS ONE, vol.8, p.65735, 2013.

C. Hsieh, C. Reiss, W. Watson, M. J. Allen, J. R. Hunter et al., A comparison of long-term trends and variability in populations of larvae of exploited and unexploited fishes in the Southern California region: A community approach, Progress in Oceanography, vol.67, pp.160-185, 2005.

H. Y. Hsieh, W. T. Lo, D. C. Liu, and W. C. Su, Influence of hydrographic features on larval fish distribution during the south-westerly monsoon in the waters of Taiwan, western North Pacific Ocean, Journal of Fish Biology, vol.76, pp.2521-2539, 2010.

K. B. Huebert, R. K. Cowen, and S. Sponaugle, Vertical migrations of reef fish larvae in the Straits of Florida and effects on larval transport, Limnology and Oceanography, vol.56, pp.1653-1666, 2011.

C. M. Huijbers, I. Nagelkerken, A. O. Debrot, and E. Jongejans, Geographic coupling of juvenile and adult habitat shapes spatial population dynamics of a coral reef fish, Ecology, vol.94, pp.1859-1870, 2013.

C. M. Huijbers, I. Nagelkerken, and C. A. Layman, Fish movement from nursery bays to coral reefs: a matter of size?, Hydrobiologia, vol.750, pp.89-101, 2015.

M. Hutomo and M. K. Moosa, Indonesian marine and coastal biodiversity: Present status, INDIAN J. MAR. SCI, vol.34, p.10, 2005.

G. A. Hyndes, P. Francour, P. Guidetti, K. L. Heck, and G. Jenkins, The Roles of Seagrasses in Structuring Associated Fish Assemblages and Fisheries, 2018.

G. A. Kendrick and . Ralph, Seagrasses of Australia, pp.589-627

I. Instat and M. , Enquête Démographique et de Santé de Madagascar, INSTAT et ICF Macro, 2008.

S. C. Iotc, Madagascar National Report (Meeting documents No. IOTC-2009-SC-INF04), 2009.

J. Irisson, C. Guigand, and C. B. Paris, Detection and quantification of marine larvae orientation in the pelagic environment, Limnology and Oceanography: Methods, vol.7, pp.664-672, 2009.

E. L. Jackson, A. A. Rowden, M. J. Attrill, S. J. Bossey, and M. B. Jones, The importance of seagrass beds as a habitat for fishery species, Oceanography and Marine Biology: An Annual Review, vol.39, pp.269-303, 2001.

J. B. Jackson, M. X. Kirby, W. H. Berger, K. A. Bjorndal, L. W. Botsford et al., Historical overfishing and the recent collapse of coastal ecosystems, Science, vol.293, pp.629-637, 2001.

T. Jallerat, Potentiel des images du satellite Sentinel-2A pour le suivi de la turbidité dans la région de, 2016.

M. K. James, P. R. Armsworth, L. B. Mason, and L. Bode, The structure of reef fish metapopulations: modelling larval dispersal and retention patterns, Proceedings of the Royal Society B: Biological Sciences, vol.269, pp.2079-2086, 2002.

H. Jaonalison, Structure des assemblages des Post-larves de poissons récifaux du, 2014.

H. Jaonalison, J. Mahafina, P. Valade, J. Durand, A. Collet et al., Biodiversity of fish post-larvae in SW Madagascar'. 9th WIOMSA Scientific Symposium, 2015.

H. Jaonalison, J. Durand, J. Mahafina, H. Demarc, N. Teichert et al., Predicting abundance and species richness of presettlement tropical fishes using Random Forest algorithms, Marine Ecology Progress Series

H. Jaonalison, J. Mahafina, and D. Ponton, Fish post-larvae assemblages at two contrasted coral reef habitats in southwest Madagascar, Regional Studies in Marine Science, vol.6, pp.62-74, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01908213

G. P. Jenkins, K. P. Black, and M. J. Keough, The role of passive transport and the influence of vertical migration on the pre-settlement distribution of a temperate, demersal fish: numerical model predictions compared with field sampling, Marine Ecology Progress Series, vol.184, pp.259-271, 1999.

G. P. Jenkins, G. J. Edgar, H. M. May, and C. Shaw, Ecological basis for parallel declines in seagrass habitat and catches of commercial fish in western Port Bay, Bureau of Resource Sciences Proceedings, pp.125-136, 1993.

G. P. Jenkins and D. King, Variation in larval growth can predict the recruitment of a temperate, seagrass-associated fish, Oecologia, vol.147, pp.641-649, 2006.

. Jpl-mur-measures-project, GHRSST Level 4 MUR Global Foundation Sea Surface Temperature Analysis, 2010.

M. Juncker, Young Coral reef fish of Wallis and the Central Pacific: identification guide, p.170, 2007.

I. A. Kimirei, I. Nagelkerken, B. Griffioen, C. Wagner, and Y. D. Mgaya, Ontogenetic habitat use by mangrove/seagrass-associated coral reef fishes shows flexibility in time and space, Estuarine, Coastal and Shelf Science, vol.92, pp.47-58, 2011.

M. Kingsford and M. Finn, The influence of phase of the moon and physical processes on the input of presettlement fishes to coral reefs, Journal of Fish Biology, vol.51, pp.176-205, 1997.

V. Klemas, Remote sensing of environmental indicators of potential fish aggregation: An overview, Baltica, vol.25, pp.99-112, 2012.

A. Knudby, A. Brenning, and E. Ledrew, New approaches to modelling fish-habitat relationships, Ecological Modelling, vol.221, pp.503-511, 2010.

H. Ko, Y. Wang, T. Chiu, M. Lee, M. Leu et al., Evaluating the Accuracy of Morphological Identification of Larval Fishes by Applying DNA Barcoding, PLoS ONE, vol.8, p.53451, 2013.

M. Koehl, J. Strother, M. Reidenbach, J. Koseff, and M. Hadfield, Individual-based model of larval transport to coral reefs in turbulent, wave-driven flow: behavioral responses to dissolved settlement inducer, Marine Ecology Progress Series, vol.335, pp.1-18, 2007.

K. E. Kohler and S. M. Gill, Coral Point Count with Excel extensions (CPCe): A Visual Basic program for the determination of coral and substrate coverage using random point count methodology, Computers & Geosciences, vol.32, pp.1259-1269, 2006.

J. A. Koslow and P. C. Davison, Productivity and biomass of fishes in the California Current Large Marine Ecosystem: Comparison of fishery-dependent and -independent time series. Environmental Development., Thematic Issue -Ecosystem Based Management of Large Marine Ecosystems, vol.17, pp.23-32, 2016.

J. A. Koslow, R. Goericke, and W. Watson, Fish assemblages in the Southern California Current: relationships with climate, Fisheries Oceanography, vol.22, pp.207-219, 2013.

J. A. Koslow and M. Wright, Ichthyoplankton sampling design to monitor marine fish populations and communities. Marine Policy, vol.68, pp.55-64, 2016.

M. Kuhn, Classification and Regression Training, 2019.

S. Kumar, G. Stecher, and K. Tamura, MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets, Mol Biol Evol, vol.33, pp.1870-1874, 2016.

J. Laroche and N. Ramananarivo, A preliminary survey of the artisanal fishery on coral reefs of the Tulear Region (southwest Madagascar), Coral Reefs, vol.14, pp.193-200, 1995.

J. Laroche, J. Razanoelisoa, E. Fauroux, and M. W. Rabenevanana, The reef fisheries surrounding the south-west coastal cities of Madagascar, Fisheries Management and Ecology, vol.4, pp.285-299, 1997.

G. Latombe, M. A. Mcgeoch, D. Nipperess, and C. Hui, zetadiv: an R package for computing compositional change across multiple sites, assemblages or cases, 2018.

L. Borgne, R. Blanchot, J. Charpy, and L. , Zooplankton of tikehau atoll (Tuamotu archipelago) and its relationship to particulate matter, Marine Biology, vol.102, pp.341-353, 1989.

L. Manach, F. Gough, C. Harris, A. Humber, F. Harper et al., Unreported fishing, hungry people and political turmoil: the recipe for a food security crisis in Madagascar, Marine Policy, vol.36, pp.218-225, 2012.

J. R. Leathwick, J. Elith, M. P. Francis, T. Hastie, and P. Taylor, Variation in demersal fish species richness in the oceans surrounding New Zealand: an analysis using boosted regression trees, Marine Ecology Progress Series, vol.321, pp.267-281, 2006.

P. Legendre and E. D. Gallagher, Ecologically meaningful transformations for ordination of species data, Oecologia, vol.129, pp.271-280, 2001.

J. Leis, Behaviour as input for modelling dispersal of fish larvae: behaviour, biogeography, hydrodynamics, ontogeny, physiology and phylogeny meet hydrography, Marine Ecology Progress Series, vol.347, pp.185-193, 2007.

J. M. Leis, Taxonomy and systematics of larval Indo-Pacific fishes: a review of progress since 1981, Ichthyological Research, vol.62, pp.9-28, 2015.

J. M. Leis and B. M. Carson-ewart, The larvae of Indo-Pacific coastal fishes : an identification guide to marine fish larvae, 2004.

G. Lepoint, B. Frédérich, S. Gobert, and E. Parmentier, Isotopic ratios and elemental contents as indicators of seagrass C processing and sewage influence in a tropical macrotidal ecosystem, SCI. MAR, vol.72, pp.109-117, 2008.

P. S. Levin, W. Chiasson, and J. M. Green, Geographic differences in recruitment and population structure of a temperate reef fish, Marine Ecology Progress Series, vol.161, pp.23-35, 1997.

A. Liaw and M. Wiener, Classification and Regression by randomForest. R news, vol.2, pp.18-22, 2002.

I. Lin, W. T. Liu, C. Wu, G. T. Wong, C. Hu et al., New evidence for enhanced ocean primary production triggered by tropical cyclone, Geophysical Research Letters, vol.30, 1718.

D. C. Lindquist and R. F. Shaw, Effects of current speed and turbidity on stationary light-trap catches of larval and juvenile fishes, Fishery Bulletin, vol.103, pp.438-444, 2005.

S. J. Lockwood, J. H. Nichols, and W. A. Dawson, The estimation of a mackerel (Scomber scombrus L.) spawning stock size by plankton survey, Journal of Plankton Research, vol.3, pp.217-233, 1981.

M. Maamaatuaiahutapu, G. Remoissenet, and R. Galzin, Guide d'identification des larves de poissons récifauxde Polynésie française, Téthys. ed. Coral Reef Initiative for the south Pacific, p.108, 2006.

J. Mahafina, Perception et comportement des pêcheurs pour une gestion durable de la biodiversité et de la pêcherie récifale du, 2011.

J. Mahafina, G. Lecaillon, P. Chabanet, C. Ralijaona, L. N. Ranaivomanana et al., Capture & Culture of Post-larval fish: A possible alterantive to overexploitation of artisanal fisheries in, 2009.

M. P. Marchetti, E. Esteban, M. Limm, and R. Kurth, Evaluating Aspects of Larval Light Trap Bias and Specificity in the Northern Sacramento River System: Do Size and Color Matter?, vol.39, pp.269-279, 2004.

V. T. Martin, Identification des paramètres de survie des post-larves de poissons récifaux issus de la PCC, 2011.

, Institut Halieutique et des Sciences Marines, Institut Halieutique et des Sciences Marines

S. Mavruk, F. Bengil, A. Yüksek, C. E. Özyurt, V. B. Kiya?a et al., Intra-annual patterns of coastal larval fish assemblages along environmental gradients in the northeastern Mediterranean. Fisheries Oceanography, vol.27, pp.232-245, 2018.

I. A. Mclaren and P. Avendaño, Prey field and diet of larval cod on Western Bank, Scotian Shelf, Canadian Journal of Fisheries and Aquatic Sciences, vol.52, pp.448-463, 1995.

K. W. Mcmahon, M. L. Berumen, and S. R. Thorrold, Linking habitat mosaics and connectivity in a coral reef seascape, Proceedings of the National Academy of Sciences, vol.109, pp.15372-15376, 2012.

. Mef, Fourth National Report on Biological Diversity Convention Madagascar. Ministry of Environment and Forests, 2009.

T. Meissner and F. J. Wentz, Version 2.0 validated release. Remote Sensing Systems, 2016.

P. Melià, M. Schiavina, M. Rossetto, M. Gatto, S. Fraschetti et al., Looking for hotspots of marine metacommunity connectivity: a methodological framework, Scientific Reports, vol.6, p.23705, 2016.

C. Meredith, J. Hoffman, A. Trebitz, G. Peterson, J. Lietz et al., Development of DNA-based Identification methods to track the species composition of fish larvae, 2017.

M. Meredith, Quick and Dirty Estimates for Wildlife Populations, 2019.

M. France-océan-indien, Bilan des activités cycloniques -bassin Sud-ouest de l'Océan Indien, 2017.

M. France,

T. Miethe, C. Dytham, U. Dieckmann, and J. W. Pitchford, Marine reserves and the evolutionary effects of fishing on size at maturation, ICES Journal of Marine Science, vol.67, pp.412-425, 2010.

M. Miya, Y. Sato, T. Fukunaga, T. Sado, J. Y. Poulsen et al., MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species, Royal Society Open Science, vol.2, p.150088, 2015.

K. Morsink, Hurricanes, Typhoons, and Cyclones, 2018.

S. Ocean,

H. G. Moser and W. Watson, Distribution and abundance of early life history stages of the California halibut, Paralichthys californicus and comparisons with the fantail sole, Xystreurys liolepis, Fishery Bulletin, vol.174, pp.31-84, 1990.

M. A. Murphy, J. S. Evans, and A. Storfer, Quantifying Bufo boreas connectivity in Yellowstone National Park with landscape genetics, Ecology, vol.91, pp.252-261, 2010.

I. Nagelkerken, S. Kleijnen, T. Klop, R. Van-den-brand, E. De-la-morinière et al., Dependence of Caribbean reef fishes on mangroves and seagrass beds as nursery habitats: a comparison of fish faunas between bays with and without mangroves/seagrass beds, Marine Ecology Progress Series, vol.214, pp.225-235, 2001.

, MODIS-Aqua Level 3 Mapped Chlorophyll Data Version, 2017.

J. H. Nichols, D. B. Bennett, D. J. Symonds, and R. Grainger, Estimation of the stock size of adult Nephrops norvegicus (L.) from larvae surveys in the western Irish Sea in 1982, Journal of Natural History, vol.21, pp.1433-1450, 1987.

D. Nicolas, J. Lobry, M. Lepage, B. Sautour, O. Le-pape et al., Fish under influence: A macroecological analysis of relations between fish species richness and environmental gradients among European tidal estuaries, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00474505

, Estuarine, Coastal and Shelf Science, vol.86, pp.137-147

K. A. Njagi, Factors Affecting Profitability of Fish Farming Under Economic Stimulus Programme in Tigania East District, IOSR Journal of Business and Management, vol.15, pp.25-36, 2013.

L. M. Nordlund, R. K. Unsworth, M. Gullström, and L. C. Cullen-unsworth, Global significance of seagrass fishery activity, Fish and Fisheries, vol.19, pp.399-412, 2018.

M. J. Ntiba and V. Jaccarini, Gonad maturation and spawning times of Siganus sutor off the Keny a coast: evidence for definite spawning seasons in atropical fish, Journal of Fish Biology, vol.37, pp.315-325, 1990.

J. Oksanen, F. G. Blanchet, M. Friendly, R. Kindt, P. Legendre et al., Community Ecology Package, 2019.

M. P. Olivar, M. Emelianov, F. Villate, I. Uriarte, F. Maynou et al., The role of oceanographic conditions and plankton availability in larval fish assemblages off the Catalan coast, Fisheries Oceanography, vol.19, pp.209-229, 2010.

R. J. Orth, T. J. Carruthers, W. C. Dennison, C. M. Duarte, J. W. Fourqurean et al., A Global Crisis for Seagrass Ecosystems, BioScience, vol.56, pp.987-996, 2006.

R. W. Owen, N. C. Lo, J. L. Butler, G. H. Theilacker, A. Alvariño et al., Spawning and Survival Patterns of Larval Northern Anchovy, Engraulis mordax, Contrasting Environments-A Site-Intensive Study. Fishery bulletin, vol.87, pp.673-688, 1971.

C. B. Paris and R. K. Cowen, Direct evidence of a biophysical retention mechanism for coral reef fish larvae, Limnology and Oceanography, vol.49, pp.1964-1979, 2004.

M. J. Parsley, D. E. Palmer, and R. W. Burkhardt, Variation in Capture Efficiency of a Beach Seine for Small Fishes, North American Journal of Fisheries Management, vol.9, pp.239-244, 1989.

G. G. Pegg, B. Sinclair, L. Briskey, and W. J. Aspden, MtDNA barcode identification of fish larvae in the southern Great Barrier Reef -Australia, Scientia Marina, vol.70, pp.7-12, 2006.

H. T. Pinheiro, L. A. Rocha, R. M. Macieira, A. Carvalho-filho, A. B. Anderson et al., South-western Atlantic reef fishes: Zoogeographical patterns and ecological drivers reveal a secondary biodiversity centre in the Atlantic Ocean, Diversity and Distributions, vol.24, pp.951-965, 2018.

D. Ponton, L. Carassou, S. Raillard, and P. Borsa, Geometric morphometrics as a tool for identifying emperor fish (Lethrinidae) larvae and juveniles, Journal of Fish Biology, vol.83, pp.14-27, 2013.

J. M. Potts and J. Elith, Comparing species abundance models, Ecological Modelling., Predicting Species Distributions, vol.199, pp.153-163, 2006.

R. Poulin, Comparison of Three Estimators of Species Richness in Parasite Component Communities, The Journal of Parasitology, vol.84, pp.485-490, 1998.

J. F. Price, J. Morzel, and P. P. Niiler, Warming of SST in the cool wake of a moving hurricane, Journal of Geophysical Research, vol.113, p.7010, 2008.

. R-core-team, R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, 2018.

L. R. Raharinaivo, H. Jaonalison, J. Mahafina, D. Ponton, and . Soumis, Size at maturity of smallsized tropical fishes: a case study based on 166 species caught in seagrass beds in southwestern Madagascar

N. H. Rahoasa, Étude des activités d'exploitation des poissons d'ornements récifaux à Madagascar, cas de la région sud-ouest, Institut Halieutique et des Sciences Marines, 2018.

T. Rajaee and A. Boroumand, Forecasting of chlorophyll-a concentrations in South San Francisco Bay using five different models, Applied Ocean Research, vol.53, pp.208-217, 2015.

F. Ramahatratra, La distribution des poissons herbivores et la pêche traditionnelle sur le Grand Récif de Toliara'. Institut Halieutique et des Sciences Marines, p.127, 2014.

J. D. Ramanantsoa, M. Krug, P. Penven, M. Rouault, and J. Gula, Coastal upwelling south of Madagascar: Temporal and spatial variability, Journal of Marine Systems, vol.178, pp.29-37, 2018.

L. N. Ranaivomanana, Identification des conditions d'appropriation de la gestion durable des ressources naturelles et des écosystèmes: cas du Grand Récif de Toliara, 2006.

, Institut Halieutique et des Sciences Marines (IH.SM)

S. Ratnasingham and P. D. Hebert, A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System, PLOS ONE, vol.8, p.66213, 2013.

H. B. Ravelohasina, R. Rasolofonirina, J. Mahafina, and H. Jaonalison, Essay of Siganus sutor aquaculture in Madagascar: for promising alternative activity for traditional fishermen, 2017.

K. Reid, E. Crochelet, P. Bloomer, and T. B. Hoareau, Investigating the origin of vagrant dusky groupers, Epinephelus marginatus (Lowe, 1834), in coastal waters of Réunion Island, Molecular Phylogenetics and Evolution, vol.103, pp.98-103, 2016.

D. A. Reynalte-tataje, K. Nakatani, R. Fernandes, A. A. Agostinho, and A. Bialetzki, Temporal distribution of ichthyoplankton in the Ivinhema River (Mato Grosso do Sul State/ Brazil): influence of environmental variables, Neotropical Ichthyology, vol.9, pp.427-436, 2011.

D. A. Reynalte-tataje, E. Zaniboni-filho, A. Bialetzki, and A. A. Agostinho, Temporal variability of fish larvae assemblages: influence of natural and anthropogenic disturbances, Neotropical Ichthyology, vol.10, pp.837-846, 2012.

C. M. Roberts, J. P. Hawkins, and F. R. Gell, The role of marine reserves in achieving sustainable fisheries, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.360, pp.123-132, 2005.

D. R. Robertson, D. G. Green, and B. C. Victor, Temporal Coupling of Production and Recruitment of Larvae of a Caribbean Reef Fish, Ecology, vol.69, pp.370-381, 1988.

V. Roubeix, M. Daufresne, C. Argillier, J. Dublon, A. Maire et al., Physico-chemical thresholds in the distribution of fish species among French lakes. Knowledge & Management of Aquatic Ecosystems, vol.418, pp.1-14, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01735584

C. S. Rousseaux and W. W. Gregg, Forecasting Ocean Chlorophyll in the Equatorial Pacific. Frontiers in Marine Science, vol.4, p.236, 2017.

J. A. Schlaefer, E. Wolanski, J. Lambrechts, and M. J. Kingsford, Wind Conditions on the Great Barrier Reef Influenced the Recruitment of Snapper (Lutjanus carponotatus), Frontiers in Marine Science, vol.5, pp.1-20, 2018.

B. Semmens, E. Buhle, A. Salomon, and C. Pattengill-semmens, A hotspot of non-native marine fishes: evidence for the aquarium trade as an invasion pathway, Marine Ecology Progress Series, vol.266, pp.239-244, 2004.

A. L. Shanks, Pelagic larval duration and dispersal distance revisited, The Biological Bulletin, vol.216, pp.373-385, 2009.

R. Short, R. Gurung, M. Rowcliffe, N. Hill, and E. J. Milner-gulland, The use of mosquito nets in fisheries: A global perspective, PLOS ONE, vol.13, p.191519, 2018.

E. P. Smith and G. Van-belle, Nonparametric estimation of species richness, Biometrics, vol.40, pp.119-129, 1984.

J. A. Smith, A. G. Miskiewicz, L. E. Beckley, J. D. Everett, V. Garcia et al., A database of marine larval fish assemblages in Australian temperate and subtropical waters, p.180207, 2018.

A. Sournia, Productivité primaire dans le canal de Mozambique, Journal of the Marine Biological Association of India, vol.14, pp.139-147, 1972.

R. K. Unsworth and L. C. Cullen, Recognising the necessity for Indo-Pacific seagrass conservation, Conservation Letters, vol.3, pp.63-73, 2010.

R. K. Unsworth, S. L. Hinder, O. G. Bodger, and L. C. Cullen-unsworth, Food supply depends on seagrass meadows in the coral triangle, Environmental Research Letters, vol.9, p.94005, 2014.

R. K. Unsworth, L. M. Nordlund, and L. C. Cullen-unsworth, Seagrass meadows support global fisheries production, Conservation Letters, vol.12, 2019.

R. P. Vasconcelos, S. Henriques, S. França, S. Pasquaud, I. Cardoso et al., Global patterns and predictors of fish species richness in estuaries, The Journal of Animal Ecology, vol.84, pp.1331-1341, 2015.

R. D. Ward, T. S. Zemlak, B. H. Innes, P. R. Last, and P. D. Hebert, DNA barcoding Australia's fish species, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol.360, pp.1847-1857, 2005.

M. Waycott, C. M. Duarte, T. J. Carruthers, R. J. Orth, W. C. Dennison et al.,

W. J. Kenworthy, F. T. Short, and S. L. Williams, Accelerating loss of seagrasses across the globe threatens coastal ecosystems, Proceedings of the National Academy of Sciences, vol.106, pp.12377-12381, 2009.

L. A. Weigt, C. C. Baldwin, A. Driskell, D. G. Smith, A. Ormos et al., Using DNA Barcoding to Assess Caribbean Reef Fish Biodiversity: Expanding Taxonomic and Geographic Coverage, PLOS ONE, vol.7, p.41059, 2012.

F. J. Wentz, L. Ricciardulli, C. Gentemann, T. Meissner, K. A. Hilburn et al., Remote Sensing Systems Coriolis WindSat, 2013.

T. Wernberg, D. A. Smale, F. Tuya, M. S. Thomsen, T. J. Langlois et al., An extreme climatic event alters marine ecosystem structure in a global biodiversity hotspot, Nature Climate Change, vol.3, pp.78-82, 2013.

F. Werner and R. Fröndt, Automated Purification of Genomic DNA from Tissue with the Macherey-Nagel NucleoMag® Tissue Kit on the epMotion® 5075. Application note, vol.365, pp.1-7, 2015.

A. Wibowo, N. Wahlberg, and A. Vasemägi, DNA barcoding of fish larvae reveals uncharacterised biodiversity in tropical peat swamps of New Guinea, Indonesia. Marine and Freshwater Research, vol.68, 2017.

A. Albajes-eizagirre, L. Romero, A. Soria-frisch, and Q. Vanhellemont, Jellyfish prediction of occurrence from remote sensing data and a non-linear pattern recognition approach, 2011.

, Proc SPIE, vol.8174

E. Archer, Estimate Permutation p-Values for Random Forest Importance Metrics (Version 2.1.5), 2016.

K. M. Bailey, H. Nakata, and H. W. Van-der-veer, The Planktonic Stages of Flatfishes: Physical and Biological Interactions in Transport Processes, 2005.

, Blackwell Science Ltd, pp.94-119

I. Berenshtein, C. B. Paris, H. Gildor, E. Fredj, Y. Amitai et al., Autocorrelated directional swimming can enhance settlement success and connectivity in fish larvae, J Theor Biol, vol.439, pp.76-85, 2018.

L. Breiman, A. Cutler, A. Liaw, and M. Wiener, Breiman and Cutler's Random Forests for Classification and Regression, 2018.

J. H. Bruggemann, M. Rodier, M. Guillaume, S. Andréfouët, R. Arfi et al., Wicked Social-Ecological Problems Forcing Unprecedented Change on the Latitudinal Margins of Coral Reefs: the Case of Southwest Madagascar, Ecol Soc, vol.17, p.47, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00852797

S. C. Burgess, M. J. Kingsford, and K. P. Black, Influence of tidal eddies and wind on the distribution of presettlement fishes around One Tree Island, Great Barrier Reef, Mar Ecol Prog Ser, vol.341, pp.233-242, 2007.

L. Chen, K. Lan, Y. Chang, and W. Chen, Summer Assemblages and Biodiversity of Larval Fish Associated with Hydrography in the Northern South China Sea, Mar Coast Fish, vol.10, pp.467-480, 2018.

C. Chevalier, J. Devenon, G. Rougier, and J. Blanchot, Hydrodynamics of the Toliara Reef Lagoon (Madagascar): Example of a Lagoon Influenced by Waves and Tides, J Coast Res, vol.31, pp.1403-1417, 2014.

. Liv,

H. J. Cho, Effects of Prevailing Winds on Turbidity of a Shallow Estuary, Int J Environ Res Public Health, vol.4, pp.185-192, 2007.

R. K. Cowen and P. F. Sale, Larval Dispersal and Retention and Consequences for Population Connectivity, Sale PF (eds) Dynamics and Diversity in a Complex Ecosystem. Coral Reef Fishes, pp.149-170, 2002.

R. Cowen, G. Gawarkiewicz, J. Pineda, S. Thorrold, and F. Werner, Population Connectivity in Marine Systems: An Overview, Oceanography, vol.20, pp.14-21, 2007.

B. F. Darst, K. C. Malecki, and C. D. Engelman, Using recursive feature elimination in random forest to account for correlated variables in high dimensional data, BMC Genet, vol.19, pp.65-70, 2018.

. Esr, OSCAR third degree resolution ocean surface currents, NASA Physical Oceanography DAAC, 2009.

E. Falfán-vázquez, U. Ordóñez-lópez, and M. Órnelas-roa, Spatial variation of Snapper and Grouper larvae in Yucatan Shelf, Hidrobiológica, vol.18, pp.69-76, 2008.

R. Fisher, Swimming speeds of larval coral reef fishes: impacts on self-recruitment and dispersal, Mar Ecol Prog Ser, vol.285, pp.223-232, 2005.

S. França and H. N. Cabral, Predicting fish species richness in estuaries: Which modeling technique to use?, Environ Model Softw, vol.66, pp.17-26, 2015.

S. França, R. P. Vasconcelos, V. F. Fonseca, S. E. Tanner, P. Reis-santos et al., Predicting fish community properties within estuaries: Influence of habitat type and other environmental features, Estuar Coast Shelf Sci, vol.107, pp.22-31, 2012.

M. P. Francis, M. A. Morrison, J. Leathwick, C. Walsh, and C. Middleton, Predictive models of small fish presence and abundance in northern New Zealand harbours, Estuar Coast Shelf Sci, vol.64, pp.419-435, 2005.

M. P. Francis, M. A. Morrison, J. Leathwick, and C. Walsh, Predicting patterns of richness, occurrence and abundance of small fish in New Zealand estuaries, Mar Freshwater Res, vol.62, pp.1327-1341, 2011.

R. Genuer, J. Poggi, and C. Tuleau-malot, Variable selection using random forests, Pattern Recognit Lett, vol.31, pp.2225-2236, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00755489

I. Guyon and A. Elisseeff, An Introduction to Variable and Feature Selection, J Mach Learn Res, vol.3, pp.1157-1182, 2003.

S. A. Harris, D. P. Cyrus, and L. E. Beckley, Horizontal Trends in Larval Fish Diversity and Abundance Along an Ocean-Estuarine Gradient on the Northern, Estuar Coast Shelf Sci, vol.53, pp.221-235, 2001.

M. Hickford and D. Schiel, Evaluation of the performance of light traps for sampling fish larvae in inshore temperate waters, Mar Ecol Prog Ser, vol.186, pp.293-302, 1999.

K. B. Huebert, R. K. Cowen, and S. Sponaugle, Vertical migrations of reef fish larvae in the Straits of Florida and effects on larval transport, Limnol Oceanogr, vol.56, pp.1653-1666, 2011.

J. Irisson, C. Guigand, and C. B. Paris, Detection and quantification of marine larvae orientation in the pelagic environment, Limnol Oceanogr Methods, vol.7, pp.664-672, 2009.

M. S. Islam, M. Hibino, and M. Tanaka, Distribution and dietary relationships of the Japanese temperate bass Lateolabrax japonicus juveniles with two contrasting copepod assemblages in estuarine nursery grounds in the Ariake Sea, Japan. J Fish Biol, vol.68, pp.569-593, 2006.

J. B. Jackson, M. X. Kirby, W. H. Berger, K. A. Bjorndal, L. W. Botsford et al., Historical overfishing and the recent collapse of coastal ecosystems, Science, vol.293, pp.629-637, 2001.

M. K. James, P. R. Armsworth, L. B. Mason, and L. Bode, The structure of reef fish metapopulations: modelling larval dispersal and retention patterns, Proc R Soc Lond B Biol Sci, vol.269, pp.2079-2086, 2002.

G. P. Jenkins, K. P. Black, and M. J. Keough, The role of passive transport and the influence of vertical migration on the presettlement distribution of a temperate, demersal fish: numerical model predictions compared with field sampling, Mar Ecol Prog Ser, vol.184, pp.259-271, 1999.

, GHRSST Level 4 MUR Global Foundation Sea Surface Temperature Analysis. NASA PO.DAAC, JPL, 2015.

M. Kingsford and M. Finn, The influence of phase of the moon and physical processes on the input of presettlement fishes to coral reefs, J Fish Biol, vol.51, pp.176-205, 1997.

V. Klemas, Remote sensing of environmental indicators of potential fish aggregation: An overview, Baltica, vol.25, pp.99-112, 2012.

A. Knudby, A. Brenning, and E. Ledrew, New approaches to modeling fish-habitat relationships, Ecol Modell, vol.221, pp.503-511, 2010.

J. A. Koslow, R. Goericke, and W. Watson, Fish assemblages in the Southern California Current: relationships with climate, Fish Oceanogr, vol.22, pp.207-219, 2013.

J. A. Koslow and M. Wright, Ichthyoplankton sampling design to monitor marine fish populations and communities, Policy, vol.68, pp.55-64, 2016.

M. Kuhn, Classification and Regression Training (Version 6, pp.0-84, 2019.

S. Kumar, G. Stecher, and K. Tamura, MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets, Mol Biol Evol, vol.33, pp.1870-1874, 2016.

G. Latombe, M. A. Mcgeoch, D. Nipperess, and C. Hui, zetadiv: an R package for computing compositional change across multiple sites, assemblages or cases, vol.BioRxiv, 2018.

J. Leis, Behaviour as input for modeling dispersal of fish larvae: behaviour, biogeography, hydrodynamics, ontogeny, physiology and phylogeny meet hydrography, Mar Ecol Prog Ser, vol.347, pp.185-193, 2007.

A. Liaw and M. Wiener, Classification and Regression by randomForest. R news, vol.2, pp.18-22, 2002.

I. Lin, W. T. Liu, C. Wu, G. Wong, C. Hu et al., New evidence for enhanced ocean primary production triggered by tropical cyclone, 2003.

, Geophys Res Lett, vol.30

D. C. Lindquist and R. F. Shaw, Effects of current speed and turbidity on stationary light-trap catches of larval and juvenile fishes, Fish Bull, vol.103, pp.438-444, 2005.

I. A. Mclaren and P. Avendaño, Prey field and diet of larval cod on Western Bank, Scotian Shelf, Can J Fish Aquat Sci, vol.52, pp.448-463, 1995.

T. Meissner and F. J. Wentz, Version 2.0 validated release. Remote Sensing Systems, 2016.

K. Morsink, Hurricanes, Typhoons, and Cyclones, 2018.

M. A. Murphy, J. S. Evans, and A. Storfer, Quantifying Bufo boreas connectivity in Yellowstone National Park with landscape genetics, Ecology, vol.91, pp.252-261, 2010.

, MODIS-Aqua Level 3 Mapped Chlorophyll Data Version R2018.0 [Data set, NASA Ocean Biology DAAC, 2017.

D. Nicolas, J. Lobry, M. Lepage, B. Sautour, L. Pape et al., Fish under influence: A macroecological analysis of relations between fish species richness and environmental gradients among European tidal estuaries, Estuar Coast Shelf Sci, vol.86, pp.137-147, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00474505

C. B. Paris and R. K. Cowen, Direct evidence of a biophysical retention mechanism for coral reef fish larvae, Limnol Oceanogr, vol.49, pp.1964-1979, 2004.

J. M. Potts and J. Elith, Comparing species abundance models, Ecol Modell, vol.199, pp.153-163, 2006.

. R-core-team, R: A Language and Environment for Statistical Computing, 2018.

J. D. Ramanantsoa, P. Penven, M. Krug, J. Gula, and M. Rouault, Uncovering a New Current: The Southwest MAdagascar Coastal Current, Geophys Res Lett, vol.45, pp.1930-1938, 2018.

S. Ratnasingham and P. Hebert, A DNA-based registry for all animal species: the Barcode Index Number (BIN) system, PLoS One, vol.8, 2013.

D. R. Robertson, D. G. Green, and B. C. Victor, Temporal Coupling of Production and Recruitment of Larvae of a Caribbean Reef Fish, Ecology, vol.69, pp.370-381, 1988.

J. A. Schlaefer, E. Wolanski, J. Lambrechts, and M. J. Kingsford, Wind Conditions on the Great Barrier Reef Influenced the Recruitment of Snapper (Lutjanus carponotatus), Front Mar Sci, vol.5, 2018.

A. L. Shanks, Pelagic larval duration and dispersal distance revisited, Biol Bull, vol.216, pp.373-385, 2009.

S. Sponaugle and R. Cowen, Nearshore patterns of coral reef fish larval supply to Barbados, West Indies, Mar Ecol Prog Ser, vol.133, pp.13-28, 1996.

D. Stearns, G. Holt, R. Forward, and P. Pickering, Ontogeny of phototactic behavior in red drum larvae (Sciaenidae: Sciaenops ocellatus), Mar Ecol Prog Ser, vol.104, pp.1-11, 1994.

M. Takahashi and Y. Watanabe, Growth rate-dependent recruitment of Japanese anchovy Engraulis japonicus in the Kuroshio-Oyashio transitional waters, Mar Ecol Prog Ser, vol.266, pp.227-238, 2004.

K. A. Tricklebank, C. A. Jacoby, and J. C. Montgomery, Composition, distribution and abundance of neustonic ichthyoplankton off northeastern New Zealand, Estuar Coast Shelf Sci, vol.34, pp.263-275, 1992.

W. Tzeng and Y. Wang, Hydrography and distribution dynamics of larval and juvenile fishes in the coastal waters of the Tanshui River estuary, Taiwan, with reference to estuarine larval transport, Mar Biol, vol.116, pp.205-217, 1993.

. Lix,

R. P. Vasconcelos, S. Henriques, S. França, S. Pasquaud, I. Cardoso et al., Global patterns and predictors of fish species richness in estuaries, J Anim Ecol, vol.84, pp.1331-1341, 2015.

F. J. Wentz, L. Ricciardulli, C. Gentemann, T. Meissner, K. A. Hilburn et al., Remote Sensing Systems Coriolis WindSat, 2013.

T. Wernberg, D. A. Smale, F. Tuya, M. S. Thomsen, T. J. Langlois et al., An extreme climatic event alters marine ecosystem structure in a global biodiversity hotspot, Nat Clim Change, vol.3, pp.78-82, 2013.

, References LXXXII

M. J. Alizadeh, M. R. Kavianpour, O. Kisi, and V. Nourani, A new approach for simulating and forecasting the rainfall-runoff process within the next two months, J Hydrol, vol.548, pp.588-597, 2017.

M. J. Anderson, Permutational Multivariate Analysis of Variance (PERMANOVA), 2017.

W. Statsref, Statistics Reference Online, pp.1-15

L. Carassou, L. Borgne, R. , R. E. Ponton, and D. , Spatial and temporal distribution of zooplankton related to the environmental conditions in the coral reef lagoon of New Caledonia, Southwest Pacific, Mar Pollut Bull, vol.61, pp.367-374, 2010.

E. Chassot, S. Bonhommeau, N. K. Dulvy, F. Mélin, R. Watson et al., Global marine primary production constrains fisheries catches, Ecol Lett, vol.13, pp.495-505, 2010.
URL : https://hal.archives-ouvertes.fr/ird-00470551

L. Chen, K. Lan, Y. Chang, and W. Chen, Summer Assemblages and Biodiversity of Larval Fish Associated with Hydrography in the Northern South China Sea, Mar Coast Fish, vol.10, pp.467-480, 2018.

C. Chevalier, J. Devenon, G. Rougier, and J. Blanchot, Example of a Lagoon Influenced by Waves and Tides, Hydrodynamics of the Toliara Reef Lagoon, vol.31, pp.1403-1416, 2015.

J. J. Cione, P. Molina, J. Kaplan, and P. G. Black, SST time series directly under tropical cyclones: Observations and implications, Preprint 24th Conference on Hurricanes and Tropical Meteorology Fort, pp.1-1, 2000.

K. R. Clarke, R. M. Warwick, and P. M. Laboratory, Postsettlement Life Cycle Migration Patterns and Habitat Preference of Coral Reef Fish that use Seagrass and Mangrove Habitats as Nurseries, Estuar Coast Shelf Sci, vol.55, pp.309-321, 1994.

A. Cooke, . Ratomahenina, E. Ranaivosoin, and H. Razafindraibe, Seas at the millennium: an environmental evaluation: 2. Regional chapters: The Indian Ocean to The Pacific, 2 nd edn, pp.113-131, 2000.

R. A. Dare and J. L. Mcbride, Sea Surface Temperature Response to Tropical Cyclones, Mon Weather Rev, vol.139, pp.3798-3808, 2011.

P. Dumas, A. Bertaud, C. Peignon, M. Léopold, and D. Pelletier, A "quick and clean" photographic method for the description of coral reef habitats, J Exp Mar Biol Ecol, vol.368, pp.161-168, 2009.

N. Ellis, S. J. Smith, and C. R. Pitcher, Gradient forests: calculating importance gradients on physical predictors, Ecology, vol.93, pp.156-168, 2012.

K. Emanuel, Contribution of tropical cyclones to meridional heat transport by the oceans, J Geophys Res Atmospheres, vol.106, pp.14771-14781, 2001.

S. Ferrier and A. Guisan, Spatial modelling of biodiversity at the community level, J Appl Ecol, vol.43, pp.393-404, 2006.

R. Fisher, Swimming speeds of larval coral reef fishes: impacts on self-recruitment and dispersal, Mar Ecol Prog Ser, vol.285, pp.223-232, 2005.

C. Folke, S. Carpenter, B. Walker, M. Scheffer, T. Elmqvist et al., Regime Shifts, Resilience, and Biodiversity in Ecosystem Management, Annu Rev Ecol Evol Syst, vol.35, pp.557-581, 2004.

C. Hsieh, C. Reiss, W. Watson, M. J. Allen, J. R. Hunter et al., A comparison of long-term trends and variability in populations of LXXXIV larvae of exploited and unexploited fishes in the Southern California region: A community approach, Prog Oceanogr, vol.67, pp.160-185, 2005.

I. Instat, Enquête Démographique et de Santé de Madagascar, 2008.

. Iotc and . Sc, , 2009.

H. Jaonalison, J. Mahafina, and D. Ponton, Fish post-larvae assemblages at two contrasted coral reef habitats in southwest Madagascar, Reg Stud Mar Sci, vol.6, pp.62-74, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01908213

J. A. Koslow and M. Wright, Ichthyoplankton sampling design to monitor marine fish populations and communities, Policy, vol.68, pp.55-64, 2016.

L. Borgne, R. Blanchot, J. Charpy, and L. , Zooplankton of tikehau atoll (Tuamotu archipelago) and its relationship to particulate matter, Mar Biol, vol.102, pp.341-353, 1989.

P. S. Levin, W. Chiasson, and J. M. Green, Geographic differences in recruitment and population structure of a temperate reef fish, Mar Ecol Prog Ser, vol.161, pp.23-35, 1997.

I. Lin, W. T. Liu, C. Wu, G. Wong, C. Hu et al., New evidence for enhanced ocean primary production triggered by tropical cyclone, 2003.

, Geophys Res Lett, vol.30, p.1718

S. J. Lockwood, J. H. Nichols, and W. A. Dawson, The estimation of a mackerel (Scomber scombrus L.) spawning stock size by plankton survey, J Plankton Res, vol.3, pp.217-233, 1981.

J. Mahafina, Perception et comportement des pêcheurs pour une gestion durable de la biodiversité et de la pêcherie récifale du Sud-Ouest de Madagascar, 2011.

M. France-océan-indien, Bilan des activités cycloniques -bassin Sud-ouest de l'Océan Indien, 2017.

K. Morsink, Hurricanes, Typhoons, and Cyclones, 2018.

J. H. Nichols, D. B. Bennett, D. J. Symonds, and R. Grainger, Estimation of the stock size of adult Nephrops norvegicus (L.) from larvae surveys in the western Irish Sea in 1982, J Nat Hist, vol.21, pp.1433-1450, 1987.

J. Oksanen, F. G. Blanchet, M. Friendly, R. Kindt, P. Legendre et al., Community Ecology Package, vol.4, pp.1-297, 2019.

R. W. Owen, N. Lo, J. L. Butler, G. H. Theilacker, A. Alvariño et al., Spawning and Survival Patterns of Larval Northern Anchovy, Engraulis mordax, in Contrasting Environments-A Site-Intensive Study, Fish Bull Wash DC, vol.87, pp.673-688, 1971.

J. F. Price, J. Morzel, and P. P. Niiler, Warming of SST in the cool wake of a moving hurricane, J Geophys Res, vol.113, p.7010, 2008.

. R-core-team, R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, 2018.

T. Rajaee and A. Boroumand, Forecasting of chlorophyll-a concentrations in South San Francisco Bay using five different models, Appl Ocean Res, vol.53, pp.208-217, 2015.

V. Roubeix, M. Daufresne, C. Argillier, J. Dublon, M. A. Nicolas et al., Physico-chemical thresholds in the distribution of fish species among French lakes, Knowl Manag Aquat Ecosyst, vol.418, pp.1-14, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01735584

C. S. Rousseaux and W. W. Gregg, Forecasting Ocean Chlorophyll in the Equatorial Pacific, Front Mar Sci, vol.4, p.236, 2017.

J. A. Smith, A. G. Miskiewicz, L. E. Beckley, J. D. Everett, V. Garcia et al., A database of marine larval fish assemblages in Australian temperate and subtropical waters, Suthers IM, vol.5, p.180207, 2018.

M. Takahashi and Y. Watanabe, Growth rate-dependent recruitment of Japanese anchovy Engraulis japonicus in the Kuroshio-Oyashio transitional waters, Mar Ecol Prog Ser, vol.266, pp.227-238, 2004.