M. Benavides-serrato and T. D. O?hara, A new species in the Ophiocoma erinaceus complex from the South-west Pacific Ocean (Echinodermata: Ophiuroidea: Ophiocomidae). Memoirs of Museum Victoria, vol.65, pp.51-56, 2008.

E. Boissin, E. Egea, J. P. Feral, and A. Chenuil, Contrasting population genetic structures in Amphipholis squamata, a complex of brooding, self-reproducing sister species sharing life history traits, Marine Ecology Progress Series, vol.539, pp.165-177, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01238310

E. Boissin, J. P. Feral, and A. Chenuil, Defining reproductively isolated units in a cryptic and syntopic species complex using mitochondrial and nuclear markers: The brooding brittle star, Amphipholis squamata (Ophiuroidea), Molecular Ecology, vol.17, pp.1732-1744, 2008.

E. Boissin, T. B. Hoareau, and P. Berrebi, Effects of current and historic habitat fragmentation on the genetic structure of the sand goby Pomatoschistus minutus (Osteichthys, Gobiidae), Biological Journal of the Linnean Society, vol.102, pp.175-198, 2011.

E. Boissin, T. B. Hoareau, J. P. Feral, and A. Chenuil, Extreme selfing rates in the cosmopolitan brittle star species complex Amphipholis squamata: Data from progeny-array and heterozygote deficiency, Marine Ecology Progress Series, vol.361, pp.151-159, 2008.

E. Boissin, T. B. Hoareau, G. Paulay, and J. H. Bruggemann, Shallowwater reef ophiuroids (Echinodermata: Ophiuroidea) of Reunion (Mascarene Islands), with biogeographic considerations, Zootaxa, vol.4098, pp.273-297, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01327053

E. Boissin, S. Stöhr, and A. Chenuil, Did vicariance and adaptation drive cryptic speciation and evolution of brooding in Ophioderma longicauda (Echinodermata: Ophiuroidea), a common AtlantoMediterranean ophiuroid?, Molecular Ecology, vol.20, pp.4737-4755, 2011.

S. Bollard, M. Pinault, J. P. Quod, E. Boissin, L. Hemery et al., Biodiversity of echinoderms on underwater lava flows with different ages, from the Piton de La Fournaise, Cahiers De Biologie Marine, vol.54, pp.491-497, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00909840

R. Bouckaert, J. Heled, D. Kuhnert, T. Vaughan, C. H. Wu et al., BEAST 2: A software platform for Bayesian evolutionary analysis, Plos Computational Biology, vol.10, 2014.

B. W. Bowen, M. R. Gaither, J. D. Dibattista, M. Iacchei, K. R. Andrews et al., Comparative phylogeography of the ocean planet, Proceedings of the National Academy of Sciences of the United States of America, vol.113, pp.7962-7969, 2016.

B. W. Bowen, L. A. Rocha, R. J. Toonen, S. A. Karl, and L. Tobo, The origins of tropical marine biodiversity, Trends in Ecology & Evolution, vol.28, pp.359-366, 2013.

S. Buerki, M. W. Callmander, S. Bachman, J. Moat, J. Labat et al., Incorporating evolutionary history into conservation planning in biodiversity hotspots, Philosophical Transactions of the Royal Society B-Biological Sciences, vol.370, 2015.

C. Cacciapaglia and R. Van-woesik, Reef-coral refugia in a rapidly changing ocean, Global Change Biology, vol.21, pp.2272-2282, 2015.

C. Cacciapaglia and R. Van-woesik, Climate-change refugia: Shading reef corals by turbidity, Global Change Biology, vol.22, pp.1145-1154, 2016.

G. Cherbonnier and A. Guille, Echinodermes: Ophiurides, Muséum National d' Histoire Naturelle, pp.1-272, 1978.

A. M. Clark and F. W. Rowe, Monograph of shallow-water Indo-West Pacific echinoderms, London: Trustees of the British Museum (Natural History), p.234, 1971.

M. N. Dawson, Cyanea capillata is not a cosmopolitan jellyfish: Morphological and molecular evidence for C. annaskala and C. rosea (Scyphozoa: Semaeostomeae: Cyaneidae) in south-eastern Australia, Invertebrate Systematics, vol.19, pp.361-370, 2005.

S. Dullinger, F. Essl, W. Rabitsch, K. H. Erb, S. Gingrich et al., Europe's other debt crisis caused by the long legacy of future extinctions, Proceedings of the National Academy of Sciences of the United States of America, vol.110, pp.7342-7347, 2013.

F. Essl, W. Rabitsch, S. Dullinger, D. Moser, and N. Milasowszky, How well do we know species richness in a well-known continent? Temporal patterns of endemic and widespread species descriptions in the European fauna, Global Ecology and Biogeography, vol.22, pp.29-39, 2013.

D. Fontaneto, J. F. Flot, and C. Q. Tang, Guidelines for DNA taxonomy, with a focus on the meiofauna, Marine Biodiversity, vol.45, pp.433-451, 2015.

T. Fujisawa and T. G. Barraclough, Delimiting species using singlelocus data and the generalized mixed Yule coalescent approach: A revised method and evaluation on simulated data sets, Systematic Biology, vol.62, pp.707-724, 2013.

M. R. Gaither and L. A. Rocha, Origins of species richness in the Indo-Malay-Philippine biodiversity hotspot: Evidence for the centre of overlap hypothesis, Journal of Biogeography, vol.40, pp.1638-1648, 2013.

P. D. Hebert, A. Cywinska, S. L. Ball, and J. R. Dewaard, Biological identifications through DNA barcodes, Proceedings of the Royal Society B-Biological Sciences, vol.270, pp.313-321, 2003.

T. B. Hoareau and E. Boissin, Design of phylum-specific hybrid primers for DNA barcoding: Addressing the need for efficient COI amplification in the Echinodermata, Molecular Ecology Resources, vol.10, pp.960-967, 2010.

T. B. Hoareau, E. Boissin, G. Paulay, and J. H. Bruggemann, The Southwestern Indian Ocean as a potential marine evolutionary hotspot: Perspectives from comparative phylogeography of reef brittle stars, Journal of Biogeography, vol.40, pp.2167-2179, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01369697

N. Hubert, C. Meyer, J. H. Bruggemann, F. Guérin, R. J. Komeno et al., Cryptic diversity in IndoPacific coralreef fishes revealed by DNA-barcoding provides new support to the CentreofOverlap hypothesis, PLoS ONE, vol.7, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00722781

K. Katoh, K. Misawa, K. Kuma, and T. Miyata, MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform, Nucleic Acids Research, vol.30, pp.3059-3066, 2002.

K. Katoh and D. M. Standley, MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability, Molecular Biology and Evolution, vol.30, pp.772-780, 2013.

S. Kumar, G. Stecher, and K. Tamura, MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets, Molecular Biology and Evolution, vol.33, pp.1870-1874, 2016.

K. K. Layton, E. A. Corstorphine, and P. D. Hebert, Exploring Canadian Echinoderm Diversity through DNA Barcodes, PLoS ONE, vol.11, pp.1-16, 2016.

J. B. Losos, S. J. Arnold, G. Bejerano, D. Hibbett, H. E. Hoekstra et al., Evolutionary Biology for the 21st Century, Plos Biology, vol.11, pp.1001466-1001467, 2013.

T. R. Mcclanahan, M. Ateweberhan, E. S. Darling, N. A. Graham, and N. A. Muthiga, Biogeography and Change among Regional Coral Communities across the Western Indian Ocean, PLoS ONE, vol.9, issue.e93385, pp.1-9, 2014.

S. E. Miller, A. Hausmann, W. Hallwachs, and D. H. Janzen, Advancing taxonomy and bioinventories with DNA barcodes, Philosophical Transactions of the Royal Society B-Biological Sciences, vol.371, 2016.

J. W. Murray, Biodiversity of living benthic foraminifera: How many species are there? Marine Micropaleontology, vol.64, pp.163-176, 2007.

J. A. Nylander, MrAIC.pl. Program distributed by the author, Evolutionary Biology Centre, 2004.

D. O. Obura, An Indian Ocean centre of origin revisited: Palaeogene and Neogene influences defining a biogeographic realm, Journal of Biogeography, vol.43, pp.229-242, 2016.

T. Pineda-enriquez, E. Boissin, and G. Paulay, Tenfold increase in species diversity revealed in integrative study of a common, widely distributed brittle star, Integrative and Comparative Biology, vol.55, pp.315-315, 2015.

R. E. Plotnick, F. A. Smith, and S. K. Lyons, The fossil record of the sixth extinction, Ecology Letters, vol.19, pp.546-553, 2016.

J. Pons, T. G. Barraclough, J. Gomez-zurita, A. Cardoso, D. P. Duran et al., Sequence-based species delimitation for the DNA taxonomy of undescribed insects, Systematic Biology, vol.55, pp.595-609, 2006.

B. Postaire, P. Gelin, J. H. Bruggemann, and H. Magalon, One species for one island? Unexpected diversity and weak connectivity in a widely distributed tropical hydrozoan, Heredity, vol.118, pp.385-394, 2017.
DOI : 10.1038/hdy.2016.126

URL : https://hal.archives-ouvertes.fr/hal-01681537

B. Postaire, H. Magalon, C. A. Bourmaud, and J. H. Bruggemann, Molecular species delimitation methods and population genetics data reveal extensive lineage diversity and cryptic species in Aglaopheniidae (Hydrozoa), Molecular Phylogenetics and Evolution, vol.105, pp.36-49, 2016.
DOI : 10.1016/j.ympev.2016.08.013

URL : https://hal.archives-ouvertes.fr/hal-01359407

N. Puillandre, A. Lambert, S. Brouillet, and G. Achaz, , 2012.

, Automatic Barcode Gap Discovery for primary species delimitation, Molecular Ecology, vol.21, pp.1864-1877

A. Rambaut, M. A. Suchard, D. Xie, and A. J. Drummond, , 2014.

C. Régnier, G. Achaz, A. Lambert, R. H. Cowie, P. Bouchet et al., Mass extinction in poorly known taxa, Proceedings of the National Academy of Sciences of the United States of America, vol.112, pp.7761-7766, 2015.

A. S. Rodrigues and K. J. Gaston, Maximising phylogenetic diversity in the selection of networks of conservation areas, Biological Conservation, vol.105, issue.01, pp.208-215, 2002.

P. S. Soltis and M. A. Gitzendanner, Molecular systematics and the conservation of rare species, Conservation Biology, vol.13, pp.471-483, 1999.

S. Stohr, E. Boissin, and A. Chenuil, Potential cryptic speciation in Mediterranean populations of Ophioderma (Echinodermata: Ophiuroidea), Zootaxa, pp.1-20, 2009.
URL : https://hal.archives-ouvertes.fr/hal-01631358

S. Stöhr, E. Boissin, and T. B. Hoareau, Taxonomic revision and phylogeny of the Ophiocoma brevipes group (Echinodermata, Ophiuroidea), with description of a new subgenus (Breviturma) and a new species, European Journal of Taxonomy, vol.68, pp.1-26, 2013.

S. Stöhr, C. Conand, and E. Boissin, Brittle stars (Echinodermata: Ophiuroidea) from La Reunion and the systematic position of Ophiocanops Koehler, Zoological Journal of the Linnean Society, vol.153, pp.545-560, 1922.

S. Uthicke, M. Byrne, and C. Conand, Genetic barcoding of commercial Beche-de-mer species (Echinodermata: Holothuroidea), Molecular Ecology Resources, vol.10, pp.634-646, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00857715

R. D. Ward, B. H. Holmes, and T. D. Hara, DNA barcoding discriminates echinoderm species, Molecular Ecology Resources, vol.8, pp.1202-1211, 2008.

J. J. Zhang, P. Kapli, P. Pavlidis, and A. Stamatakis, A general species delimitation method with applications to phylogenetic placements, Bioinformatics, vol.29, pp.2869-2876, 2013.