O. Armant, M. Schmidt, R. Ferg, M. Diotel, N. Ertzer et al., Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos, Developmental Biology, vol.380, issue.2, pp.351-362
DOI : 10.1016/j.ydbio.2013.05.006

B. Ayari, E. Hachimi, K. Yanicostas, C. Landoulsi, A. Soussi-yanicostas et al., Prokineticin 2 Expression Is Associated with Neural Repair of Injured Adult Zebrafish Telencephalon, Journal of Neurotrauma, vol.27, issue.5, pp.959-972, 2010.
DOI : 10.1089/neu.2009.0972

E. Baumgart, J. Barbosa, L. Bally-cuif, M. G?-otz, and J. Ninkovic, Stab wound injury of the zebrafish telencephalon: A model for comparative analysis of reactive gliosis, Glia, vol.109, issue.3, pp.343-357, 2012.
DOI : 10.1016/S0092-8674(02)00677-3

URL : https://hal.archives-ouvertes.fr/hal-00683609

C. Broglio, A. Dur-an, E. Oca~-na, F. , J. Enez-moya et al., Hallmarks of a common forebrain vertebrate plan: Specialized pallial areas for spatial, temporal and emotional memory in actinopterygian fish, Brain Research Bulletin, vol.66, issue.4-6, pp.277-281, 2005.
DOI : 10.1016/j.brainresbull.2005.03.021

P. Chapouton, P. Skupien, B. Hesl, M. Coolen, J. Moore et al., Notch Activity Levels Control the Balance between Quiescence and Recruitment of Adult Neural Stem Cells, Journal of Neuroscience, vol.30, issue.23, pp.7961-7974
DOI : 10.1523/JNEUROSCI.6170-09.2010

URL : https://hal.archives-ouvertes.fr/hal-00506463

P. Chapouton, K. Webb, C. Stigloher, A. Alunni, A. B. Hesl et al., Expression of Hairy/enhancer of split genes in neural progenitors and neurogenesis domains of the adult zebrafish brain, The Journal of Comparative Neurology, vol.24, issue.9, 2011.
DOI : 10.1634/stemcells.2005-0598

URL : https://hal.archives-ouvertes.fr/hal-00585367

C. Clapier and B. Cairns, The Biology of Chromatin Remodeling Complexes, Annual Review of Biochemistry, vol.78, issue.1, pp.273-304, 2009.
DOI : 10.1146/annurev.biochem.77.062706.153223

L. Cunningham, K. Candelario, and L. Li, Roles for HIF-1?? in neural stem cell function and the regenerative response to stroke, Behavioural Brain Research, vol.227, issue.2, pp.410-417, 2012.
DOI : 10.1016/j.bbr.2011.08.002

R. Davis, H. Weintraub, and A. Lassar, Expression of a single transfected cDNA converts fibroblasts to myoblasts, Cell, vol.51, issue.6, pp.987-1000, 1987.
DOI : 10.1016/0092-8674(87)90585-X

M. De-hoon, S. Imoto, J. Nolan, and S. Miyano, Open source clustering software, Bioinformatics, vol.20, issue.9, pp.1453-1454, 2004.
DOI : 10.1093/bioinformatics/bth078

K. Devaraju, F. Barnabe-heider, Z. Kokaia, and O. Lindvall, FoxJ1-expressing cells contribute to neurogenesis in forebrain of adult rats: Evidence from in vivo electroporation combined with piggyBac transposon, Experimental Cell Research, vol.319, issue.18, pp.2790-2800, 2013.
DOI : 10.1016/j.yexcr.2013.08.028

N. Diotel, C. Vaillant, C. Gabbero, S. Mironov, A. Fostier et al., Effects of estradiol in adult neurogenesis and brain repair in zebrafish, Hormones and Behavior, vol.63, issue.2, pp.193-207, 2013.
DOI : 10.1016/j.yhbeh.2012.04.003

URL : https://hal.archives-ouvertes.fr/inserm-00831715

M. Dominguez, A. Ayoub, and P. Rakic, POU-III Transcription Factors (Brn1, Brn2, and Oct6) Influence Neurogenesis, Molecular Identity, and Migratory Destination of Upper-Layer Cells of the Cerebral Cortex, Cerebral Cortex, vol.19, issue.11, pp.2632-2643, 2013.
DOI : 10.1093/hmg/ddq087

K. Edelmann, L. Glashauser, S. Sprungala, B. Hesl, M. Fritschle et al., Increased radial glia quiescence, decreased reactivation upon injury and unaltered neuroblast behavior underlie decreased neurogenesis in the aging zebrafish telencephalon, Journal of Comparative Neurology, vol.521, issue.13, 2013.
DOI : 10.1002/cne.23347

M. Ferg, O. Armant, L. Yang, T. Dickmeis, S. Rastegar et al., Gene transcription in the zebrafish embryo: regulators and networks, Briefings in Functional Genomics, vol.10, issue.6096, pp.131-143, 2014.
DOI : 10.1038/nmeth.2543

A. Ferri, M. Cavallaro, D. Braida, D. Cristofano, A. Canta et al., Sox2 deficiency causes neurodegeneration and impaired neurogenesis in the adult mouse brain, Development, vol.131, issue.15, pp.3805-3819, 2004.
DOI : 10.1242/dev.01204

M. Folgueira, P. Bayley, P. Navratilova, T. Becker, S. Wilson et al., Morphogenesis underlying the development of the everted teleost telencephalon, Neural Development, vol.7, issue.1, p.32, 2012.
DOI : 10.1073/pnas.202320599

J. Ganz, J. Kaslin, D. Freudenreich, A. Machate, M. Geffarth et al., Subdivisions of the adult zebrafish subpallium by molecular marker analysis, The Journal of Comparative Neurology, vol.78, issue.3, pp.633-655, 2012.
DOI : 10.1139/bcb-78-5-593

H. Grandel and M. Brand, Comparative aspects of adult neural stem cell activity in vertebrates, Development Genes and Evolution, vol.488, issue.3, pp.131-147, 2013.
DOI : 10.1002/cne.20571

H. Grandel, J. Kaslin, J. Ganz, I. Wenzel, and M. Brand, Neural stem cells and neurogenesis in the adult zebrafish brain: Origin, proliferation dynamics, migration and cell fate, Developmental Biology, vol.295, issue.1, pp.263-277, 2006.
DOI : 10.1016/j.ydbio.2006.03.040

P. Gray, H. Fu, P. Luo, Q. Zhao, Y. J. Ferrari et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis, Science, vol.306, issue.5705, pp.2255-2257, 2004.
DOI : 10.1126/science.1104935

T. Halazonetis, K. Georgopoulos, M. Greenberg, and P. Leder, c-Jun dimerizes with itself and with c-Fos, forming complexes of different DNA binding affinities, Cell, vol.55, issue.5, pp.917-924, 1988.
DOI : 10.1016/0092-8674(88)90147-X

Y. Heng, R. Mcleay, T. Harvey, A. Smith, G. Barry et al., NFIX Regulates Neural Progenitor Cell Differentiation During Hippocampal Morphogenesis, Cerebral Cortex, vol.6, issue.Suppl 1, pp.269-271, 2014.
DOI : 10.1186/1471-2172-6-7

URL : https://academic.oup.com/cercor/article-pdf/24/1/261/14098325/bhs307.pdf

B. Jacquet, N. Muthusamy, L. Sommerville, G. Xiao, H. Liang et al., Specification of a Foxj1-Dependent Lineage in the Forebrain Is Required for Embryonic-to-Postnatal Transition of Neurogenesis in the Olfactory Bulb, Journal of Neuroscience, vol.31, issue.25, pp.9368-9382, 2011.
DOI : 10.1523/JNEUROSCI.0171-11.2011

W. Kang and J. Hebert, A Sox2 BAC Transgenic Approach for Targeting Adult Neural Stem Cells, PLoS ONE, vol.9, issue.11, p.49038, 2012.
DOI : 10.1371/journal.pone.0049038.g005

J. Kaslin, J. Ganz, and M. Brand, Proliferation, neurogenesis and regeneration in the non-mammalian vertebrate brain, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.488, issue.3, pp.101-122, 2008.
DOI : 10.1002/cne.20571

Y. Kim, R. Nam, Y. Yoo, and C. Lee, Identification and functional evidence of GABAergic neurons in parts of the brain of adult zebrafish (Danio rerio), Neuroscience Letters, vol.355, issue.1-2, pp.29-32, 2004.
DOI : 10.1016/j.neulet.2003.10.024

N. Kishimoto, K. Shimizu, and K. Sawamoto, Neuronal regeneration in a zebrafish model of adult brain injury, Disease Models & Mechanisms, vol.5, issue.2, pp.200-209, 2012.
DOI : 10.1242/dmm.007336

C. Kizil, S. Dudczig, N. Kyritsis, A. Machate, J. Blaesche et al., The chemokine receptor cxcr5 regulates the regenerative neurogenesis response in the adult zebrafish brain, Neural Development, vol.7, issue.1, p.27, 2012.
DOI : 10.1002/dvdy.22497

C. Kizil, J. Kaslin, V. Kroehne, and M. Brand, Adult neurogenesis and brain regeneration in zebrafish, Developmental Neurobiology, vol.58, issue.Suppl 1, pp.429-461, 2012.
DOI : 10.1159/000057569

C. Kizil, N. Kyritsis, S. Dudczig, V. Kroehne, D. Freudenreich et al., Regenerative Neurogenesis from Neural Progenitor Cells Requires Injury-Induced Expression of Gata3, Developmental Cell, vol.23, issue.6, pp.1230-1237, 2012.
DOI : 10.1016/j.devcel.2012.10.014

V. Kroehne, D. Freudenreich, S. Hans, J. Kaslin, and M. Brand, Regeneration of the adult zebrafish brain from neurogenic radial glia-type progenitors, Development, vol.138, issue.22, pp.4831-4841, 2011.
DOI : 10.1242/dev.072587

N. Kyritsis, C. Kizil, S. Zocher, V. Kroehne, J. Kaslin et al., Acute Inflammation Initiates the Regenerative Response in the Adult Zebrafish Brain, Science, vol.7, issue.38, pp.1353-1356, 2013.
DOI : 10.1186/1749-8104-7-27

B. Lacar, S. Parylak, K. Vadodaria, A. Sarkar, and F. Gage, Increasing the resolution of the adult neurogenesis picture, F1000Prime Reports, vol.6, p.8, 2014.
DOI : 10.12703/P6-08

C. Lam, M. Str?-ahle, and U. , gfap and nestin reporter lines reveal characteristics of neural progenitors in the adult zebrafish brain, Developmental Dynamics, vol.488, issue.suppl 1, pp.475-486, 2009.
DOI : 10.1002/cne.20571

D. Latchman, Transcription factors: An overview, The International Journal of Biochemistry & Cell Biology, vol.29, issue.12, pp.1305-1312, 1997.
DOI : 10.1016/S1357-2725(97)00085-X

URL : http://europepmc.org/articles/pmc2002184?pdf=render

G. Lauter, I. Soll, and G. Hauptmann, Molecular characterization of prosomeric and intraprosomeric subdivisions of the embryonic zebrafish diencephalon, Journal of Comparative Neurology, vol.4, issue.3 Pt 2, pp.1093-1118, 2013.
DOI : 10.1038/89455

T. Lee and R. Young, Transcription of Eukaryotic Protein-Coding Genes, Annual Review of Genetics, vol.34, issue.1, pp.77-137, 2000.
DOI : 10.1146/annurev.genet.34.1.77

B. Lindsey and V. Tropepe, A comparative framework for understanding the biological principles of adult neurogenesis, Progress in Neurobiology, vol.80, issue.6, pp.281-307, 2006.
DOI : 10.1016/j.pneurobio.2006.11.007

B. Lindsey, A. Darabie, and V. Tropepe, The cellular composition of neurogenic periventricular zones in the adult zebrafish forebrain, The Journal of Comparative Neurology, vol.159, issue.10, pp.2275-2316, 2012.
DOI : 10.1016/j.neuroscience.2009.02.014

R. Luo and D. Dean, Chromatin Remodeling and Transcriptional Regulation, JNCI Journal of the National Cancer Institute, vol.394, issue.6689, pp.1288-1294, 1999.
DOI : 10.1038/28212

URL : https://academic.oup.com/jnci/article-pdf/91/15/1288/7796006/1288.pdf

M. M?-arz, P. Chapouton, N. Diotel, C. Vaillant, B. Hesl et al., Heterogeneity in progenitor cell subtypes in the ventricular zone of the zebrafish adult telencephalon, Glia, vol.58, pp.870-888

M. M?-arz, R. Schmidt, S. Rastegar, and U. Str?-ahle, Expression of the transcription factor Olig2 in proliferating cells in the adult zebrafish telencephalon, Developmental Dynamics, vol.43, issue.12, pp.3336-3349
DOI : 10.1002/dvdy.22455

M. M?-arz, R. Schmidt, S. Rastegar, and U. Str?-ahle, Regenerative response following stab injury in the adult zebrafish telencephalon, Developmental Dynamics, vol.62, issue.9, pp.2221-2231, 2011.
DOI : 10.1159/000071958

G. Ming and H. Song, Adult Neurogenesis in the Mammalian Brain: Significant Answers and Significant Questions, Neuron, vol.70, issue.4, pp.687-702, 2011.
DOI : 10.1016/j.neuron.2011.05.001

M. Mione, S. Shanmugalingam, D. Kimelman, and K. Griffin, Overlapping expression of zebrafish T-brain-1 and eomesodermin during forebrain development, Mechanisms of Development, vol.100, issue.1, pp.93-97, 2001.
DOI : 10.1016/S0925-4773(00)00501-3

T. Mueller and M. Wullimann, An Evolutionary Interpretation of Teleostean Forebrain Anatomy, Brain, Behavior and Evolution, vol.74, issue.1, pp.30-42, 2009.
DOI : 10.1159/000229011

T. Mueller, P. Vernier, and M. Wullimann, A phylotypic stage in vertebrate brain development: GABA cell patterns in zebrafish compared with mouse, The Journal of Comparative Neurology, vol.100, issue.4, pp.620-634, 2006.
DOI : 10.1002/aja.1002030302

URL : https://hal.archives-ouvertes.fr/hal-00018343

T. Mueller, M. Wullimann, and S. Guo, Early teleostean basal ganglia development visualized by zebrafish Dlx2a, Tbr2 (eomesa), and GAD67 gene expression, 2008.
DOI : 10.1002/cne.21604

N. Muthusamy, A. Vijayakumar, G. Cheng, . Jr, and H. Ghashghaei, mouse for recombination in epithelial cells with motile cilia, genesis, vol.36, issue.4, pp.350-358, 2014.
DOI : 10.1165/rcmb.2006-0475RC

T. Nakajima, M. Yanagihara, and H. Nishii, Temporal and regional patterns of Smad activation in the rat hippocampus following global ischemia, Journal of the Neurological Sciences, vol.337, issue.1-2, pp.25-37, 2014.
DOI : 10.1016/j.jns.2013.11.012

Y. Narita and F. Rijli, Chapter 5 Hox Genes in Neural Patterning and Circuit Formation in the Mouse Hindbrain, Curr Top Dev Biol, vol.88, pp.139-167, 2009.
DOI : 10.1016/S0070-2153(09)88005-8

C. Niehrs and N. Pollet, Synexpression groups in eukaryotes, Nature, vol.400, issue.6761, pp.483-487, 1999.
DOI : 10.1038/22813

J. Norton, ID helix-loop-helix proteins in cell growth, differentiation and tumorigenesis, J Cell Sci, vol.113, pp.3897-3905, 2000.

C. Pabo and R. Sauer, Transcription Factors: Structural Families and Principles of DNA Recognition, Annual Review of Biochemistry, vol.61, issue.1, pp.1053-1095, 1992.
DOI : 10.1146/annurev.bi.61.070192.005201

E. Pellegrini, K. Mouriec, I. Anglade, A. Menuet, L. Page et al., Identification of aromatase-positive radial glial cells as progenitor cells in the ventricular layer of the forebrain in zebrafish, The Journal of Comparative Neurology, vol.1334, issue.1, pp.150-167, 2007.
DOI : 10.1016/S0304-4165(96)00115-8

URL : https://hal.archives-ouvertes.fr/hal-00096389

A. Pieper, X. Wu, T. Han, S. Estill, Q. Dang et al., The neuronal PAS domain protein 3 transcription factor controls FGF-mediated adult hippocampal neurogenesis in mice, Proceedings of the National Academy of Sciences, vol.17, issue.10, pp.14052-14057, 2005.
DOI : 10.1046/j.1460-9568.2003.02647.x

M. Ptashne and A. Gann, Transcriptional activation by recruitment, Nature, vol.386, issue.6625, pp.569-577, 1997.
DOI : 10.1038/386569a0

F. Rodr-iguez, J. Lopez, J. Vargas, Y. Broglio, C. Salas et al., Conservation of spatial memory function in the pallial forebrain of reptiles and ray-finned fishes, J Neurosci, vol.22, pp.2894-2903, 2002.

R. Viales, R. Diotel, N. Ferg, F. Armant, O. Eich et al., The Helix-Loop-Helix Protein Id1 Controls Stem Cell Proliferation During Regenerative Neurogenesis in the Adult Zebrafish Telencephalon, STEM CELLS, vol.8, issue.3, 2014.
DOI : 10.4161/cc.8.14.9104

URL : https://hal.archives-ouvertes.fr/hal-01142576

C. Salas, C. Broglio, R. , and F. , Evolution of Forebrain and Spatial Cognition in Vertebrates: Conservation across Diversity, Brain, Behavior and Evolution, vol.62, issue.2, pp.72-82, 2003.
DOI : 10.1159/000072438

A. Saldanha, Java Treeview--extensible visualization of microarray data, Bioinformatics, vol.20, issue.17, pp.3246-3248, 2004.
DOI : 10.1093/bioinformatics/bth349

B. Schafer, B. Blakely, G. Darlington, and H. Blau, Effect of cell history on response to helix???loop???helix family of myogenic regulators, Nature, vol.344, issue.6265, pp.454-458, 1990.
DOI : 10.1038/344454a0

R. Schmidt, U. Str?-ahle, and S. Scholpp, Neurogenesis in zebrafish ??? from embryo to adult, Neural Development, vol.8, issue.1, p.3, 2013.
DOI : 10.1073/pnas.0506535102

R. Schmidt, T. Beil, U. Str?-ahle, and S. Rastegar, Stab Wound Injury of the Zebrafish Adult Telencephalon: A Method to Investigate Vertebrate Brain Neurogenesis and Regeneration, Journal of Visualized Experiments, issue.90, pp.51753-51753, 2014.
DOI : 10.3791/51753

E. Shaulian and K. M. , AP-1 as a regulator of cell life and death, Nature Cell Biology, vol.20, issue.5, pp.131-136, 2002.
DOI : 10.1128/MCB.20.10.3407-3416.2000

M. Shimada, Y. Konishi, N. Ohkawa, C. Ohtaka-maruyama, F. Hanaoka et al., Distribution of AP-2 subtypes in the adult mouse brain, Neuroscience Research, vol.33, issue.4, pp.275-280, 1999.
DOI : 10.1016/S0168-0102(99)00017-6

J. Shin, H. Park, J. Topczewska, D. Mawdsley, and B. Appel, Neural cell fate analysis in zebrafish using olig2 BAC transgenics, Methods in Cell Science, vol.25, issue.1/2, pp.7-14, 2003.
DOI : 10.1023/B:MICS.0000006847.09037.3a

R. Shirasaki and S. Pfaff, Transcriptional Codes and the Control of Neuronal Identity, Annual Review of Neuroscience, vol.25, issue.1, pp.251-281, 2002.
DOI : 10.1146/annurev.neuro.25.112701.142916

J. Soria, P. Taglialatela, S. Gil-perotin, R. Galli, A. Gritti et al., Defective Postnatal Neurogenesis and Disorganization of the Rostral Migratory Stream in Absence of the Vax1 Homeobox Gene, Journal of Neuroscience, vol.24, issue.49, 2004.
DOI : 10.1523/JNEUROSCI.3248-04.2004

T. St?-uhmer, L. Puelles, M. Ekker, and J. Rubenstein, Expression from a Dlx Gene Enhancer Marks Adult Mouse Cortical GABAergic Neurons, Cerebral Cortex, vol.12, issue.1, pp.75-85, 2002.
DOI : 10.1093/cercor/12.1.75

P. Taglialatela, J. Soria, V. Caironi, A. Moiana, and S. Bertuzzi, Compromised generation of GABAergic interneurons in the brains of Vax1-/- mice, Development, vol.131, issue.17, pp.4239-4249, 2004.
DOI : 10.1242/dev.01299

K. Takahashi and S. Yamanaka, Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors, Cell, vol.126, issue.4, pp.663-676, 2006.
DOI : 10.1016/j.cell.2006.07.024

M. Westerfield, The zebrafish book, 2007.

M. Wullimann and E. Rink, The teleostean forebrain: a comparative and developmental view based on early proliferation, Pax6 activity and catecholaminergic organization, Brain Research Bulletin, vol.57, issue.3-4, pp.363-370, 2002.
DOI : 10.1016/S0361-9230(01)00666-9

M. Wullimann, B. Rupp, and H. Reichert, Neuroanatomy of the zebrafish brain: a topological atlas, 1996.
DOI : 10.1007/978-3-0348-8979-7

C. Xiang, V. Baubet, S. Pal, L. Holderbaum, V. Tatard et al., RP58/ZNF238 directly modulates proneurogenic gene levels and is required for neuronal differentiation and brain expansion, Cell Death & Differentiation, vol.16, issue.4, pp.692-702, 2012.
DOI : 10.1038/nprot.2006.98

Q. Xu, I. Cobos, D. L. Cruz, E. Rubenstein, J. Anderson et al., Origins of Cortical Interneuron Subtypes, Journal of Neuroscience, vol.24, issue.11, pp.2612-2622, 2004.
DOI : 10.1523/JNEUROSCI.5667-03.2004

A. Yoshizawa, Y. Nakahara, T. Izawa, T. Ishitani, M. Tsutsumi et al., Zebrafish Dmrta2 regulates neurogenesis in the telencephalon, Genes to Cells, vol.14, issue.Suppl. 1, pp.1097-1109, 2011.
DOI : 10.1016/S0896-6273(00)00171-9

D. Young, M. Hassan, X. Yang, M. Galindo, A. Javed et al., Mitotic retention of gene expression patterns by the cell fate-determining transcription factor Runx2, Proceedings of the National Academy of Sciences, vol.26, issue.1, pp.3189-3194, 2007.
DOI : 10.1093/nar/26.1.362

K. Young, M. Fogarty, N. Kessaris, and W. Richardson, Subventricular Zone Stem Cells Are Heterogeneous with Respect to Their Embryonic Origins and Neurogenic Fates in the Adult Olfactory Bulb, Journal of Neuroscience, vol.27, issue.31, pp.8286-8296, 2007.
DOI : 10.1523/JNEUROSCI.0476-07.2007

G. Zupanc, Neurogenesis and neuronal regeneration in the adult fish brain, Journal of Comparative Physiology A, vol.6, issue.Suppl 1, pp.649-670, 2006.
DOI : 10.1007/978-3-540-48002-0_2

G. Zupanc, K. Hinsch, and F. Gage, Proliferation, migration, neuronal differentiation, and long-term survival of new cells in the adult zebrafish brain, The Journal of Comparative Neurology, vol.152, issue.3, pp.290-319, 2005.
DOI : 10.1007/978-3-0348-8979-7